J4_5H4P_009
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5H4P_009 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1384
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_37757.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5H4P|1|1|U|3010
5H4P|1|1|A|3011
5H4P|1|1|A|3012
*
5H4P|1|1|U|3042
5H4P|1|1|C|3043
*
5H4P|1|1|G|3098
5H4P|1|1|C|3099
5H4P|1|1|U|3100
*
5H4P|1|1|A|3134
5H4P|1|1|U|3135
5H4P|1|1|G|3136
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
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