J4_5H5U_002

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5H5U|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0909

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5H5U|1|A|C|268
5H5U|1|A|C|269
*
5H5U|1|A|G|370
5H5U|1|A|A|371
5H5U|1|A|G|372
5H5U|1|A|U|373
5H5U|1|A|A|374
5H5U|1|A|G|375
*
5H5U|1|A|U|399
5H5U|1|A|G|400
5H5U|1|A|A|401
5H5U|1|A|A|402
5H5U|1|A|U|403
5H5U|1|A|A|404||A
5H5U|1|A|U|405
5H5U|1|A|G|406
*
5H5U|1|A|C|421
5H5U|1|A|A|422
5H5U|1|A|A|423
5H5U|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28