J4_5H5U_005

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5H5U|1|A|G|1271, 5H5U|1|A|A|1272, 5H5U|1|A|U|1273, 5H5U|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_005 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0771

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5H5U|1|A|C|1270
5H5U|1|A|G|1271
5H5U|1|A|A|1272
5H5U|1|A|U|1273
5H5U|1|A|A|1274
5H5U|1|A|A|1275
5H5U|1|A|A|1276
*
5H5U|1|A|U|1294
5H5U|1|A|C|1295
*
5H5U|1|A|G|1645
5H5U|1|A|C|1646
5H5U|1|A|U|1647
5H5U|1|A|U|1648
*
5H5U|1|A|A|2009
5H5U|1|A|G|2010

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32