J4_5H5U_010
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5H5U|1|A|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5H5U_010 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0996
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5H5U|1|A|C|1833
5H5U|1|A|U|1834
5H5U|1|A|G|1835
*
5H5U|1|A|C|1905
5H5U|1|A|G|1906
*
5H5U|1|A|C|1924
5H5U|1|A|C|1925
5H5U|1|A|U|1926
5H5U|1|A|A|1927
5H5U|1|A|A|1928
5H5U|1|A|G|1929
5H5U|1|A|G|1930
5H5U|1|A|U|1931
5H5U|1|A|A|1932
5H5U|1|A|G|1933
*
5H5U|1|A|C|1967
5H5U|1|A|G|1968
5H5U|1|A|A|1969
5H5U|1|A|A|1970
5H5U|1|A|U|1971
5H5U|1|A|G|1972
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L2
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: