J4_5H5U_013

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5H5U|1|h|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_013 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1296

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5H5U|1|h|G|115
5H5U|1|h|A|116
5H5U|1|h|G|117
5H5U|1|h|U|118
5H5U|1|h|A|119
5H5U|1|h|A|120
5H5U|1|h|U|121
5H5U|1|h|G|122
*
5H5U|1|h|U|239
5H5U|1|h|G|240
*
5H5U|1|h|C|286
5H5U|1|h|U|287
5H5U|1|h|A|288
5H5U|1|h|G|289
*
5H5U|1|h|C|311
5H5U|1|h|C|312

Current chains

Chain h

16S rRNA

Nearby chains

Chain w

30S ribosomal protein S16

Chain x

30S ribosomal protein S17