J4_5H5U_014

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5H5U|1|h|C|183, 5H5U|1|h|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_014 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0927

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5H5U|1|h|G|142
5H5U|1|h|A|143
5H5U|1|h|G|144
*
5H5U|1|h|C|178
5H5U|1|h|A|179
5H5U|1|h|U|180
5H5U|1|h|A|181
5H5U|1|h|A|182
5H5U|1|h|C|183
5H5U|1|h|G|184
*
5H5U|1|h|C|193
5H5U|1|h|C|194
5H5U|1|h|A|195
5H5U|1|h|A|196
5H5U|1|h|A|197
5H5U|1|h|G|198
*
5H5U|1|h|U|219
5H5U|1|h|G|220
5H5U|1|h|C|221

Current chains

Chain h

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S20