J4_5HAU_001

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5HAU|1|1A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HAU_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0576

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5HAU|1|1A|C|256
5HAU|1|1A|U|257
*
5HAU|1|1A|G|396
5HAU|1|1A|A|397
5HAU|1|1A|G|398
5HAU|1|1A|U|399
5HAU|1|1A|A|400
5HAU|1|1A|C|401
*
5HAU|1|1A|G|425
5HAU|1|1A|G|426
5HAU|1|1A|A|427
5HAU|1|1A|A|428
5HAU|1|1A|U|429
5HAU|1|1A|C|430
5HAU|1|1A|U|431
5HAU|1|1A|G|432
*
5HAU|1|1A|U|447
5HAU|1|1A|A|448
5HAU|1|1A|A|449
5HAU|1|1A|G|450

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Z

50S ribosomal protein L28