J4_5HCP_005
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5HCP|1|1A|U|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCP_005 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0538
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5HCP|1|1A|U|1358
5HCP|1|1A|C|1359
*
5HCP|1|1A|G|1383
5HCP|1|1A|G|1384
5HCP|1|1A|U|1385
5HCP|1|1A|U|1386
5HCP|1|1A|A|1387
5HCP|1|1A|G|1388
*
5HCP|1|1A|C|1449
5HCP|1|1A|U|1450
*
5HCP|1|1A|A|1642
5HCP|1|1A|C|1643
5HCP|1|1A|C|1644
5HCP|1|1A|C|1645
5HCP|1|1A|G|1646
5HCP|1|1A|U|1647
5HCP|1|1A|A|1648
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
Coloring options: