J4_5HCP_024

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HCP_024 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0687

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5HCP|1|2A|G|2654
5HCP|1|2A|G|2655
5HCP|1|2A|G|2656
5HCP|1|2A|C|2657
*
5HCP|1|2A|G|2685
5HCP|1|2A|A|2686
5HCP|1|2A|C|2687
*
5HCP|1|2A|G|2743
5HCP|1|2A|G|2744
5HCP|1|2A|A|2745
5HCP|1|2A|A|2746
5HCP|1|2A|G|2747
*
5HCP|1|2A|C|2781
5HCP|1|2A|G|2782
5HCP|1|2A|C|2783

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14