J4_5HCQ_003
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5HCQ|1|1A|G|1316, 5HCQ|1|1A|A|1317, 5HCQ|1|1A|U|1318, 5HCQ|1|1A|G|1693
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCQ_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0527
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HCQ|1|1A|C|1315
5HCQ|1|1A|G|1316
5HCQ|1|1A|A|1317
5HCQ|1|1A|U|1318
5HCQ|1|1A|A|1319
5HCQ|1|1A|A|1320
5HCQ|1|1A|A|1321
*
5HCQ|1|1A|U|1339
5HCQ|1|1A|C|1340
*
5HCQ|1|1A|G|1691
5HCQ|1|1A|C|1692
5HCQ|1|1A|G|1693
5HCQ|1|1A|C|1694
*
5HCQ|1|1A|G|2030
5HCQ|1|1A|G|2031
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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