J4_5HCQ_006

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

5HCQ|1|1A|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HCQ_006 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.0817

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5HCQ|1|1A|G|1489
5HCQ|1|1A|A|1490
5HCQ|1|1A|C|1491
*
5HCQ|1|1A|G|1512
5HCQ|1|1A|C|1513
*
5HCQ|1|1A|G|1570
5HCQ|1|1A|G|1571
*
5HCQ|1|1A|C|1592
5HCQ|1|1A|C|1593

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains