J4_5HCQ_011
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5HCQ|1|1a|C|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCQ_011 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0669
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|1a|G|109
5HCQ|1|1a|A|110
5HCQ|1|1a|G|111
5HCQ|1|1a|U|112
5HCQ|1|1a|A|113
5HCQ|1|1a|A|114
5HCQ|1|1a|C|115
5HCQ|1|1a|G|116
*
5HCQ|1|1a|U|235
5HCQ|1|1a|C|236
*
5HCQ|1|1a|G|282
5HCQ|1|1a|U|283
5HCQ|1|1a|A|284
5HCQ|1|1a|G|285
*
5HCQ|1|1a|C|307
5HCQ|1|1a|C|308
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
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