J4_5HCR_008
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5HCR|1|1A|A|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCR_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0595
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1A|U|1863
5HCR|1|1A|U|1864
5HCR|1|1A|G|1865
*
5HCR|1|1A|C|1926
5HCR|1|1A|G|1927
*
5HCR|1|1A|C|1945
5HCR|1|1A|C|1946
5HCR|1|1A|U|1947
5HCR|1|1A|A|1948
5HCR|1|1A|A|1949
5HCR|1|1A|G|1950
5HCR|1|1A|G|1951
5HCR|1|1A|U|1952
5HCR|1|1A|A|1953
5HCR|1|1A|G|1954
*
5HCR|1|1A|C|1988
5HCR|1|1A|G|1989
5HCR|1|1A|A|1990
5HCR|1|1A|A|1991
5HCR|1|1A|A|1992
5HCR|1|1A|A|1993
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: