J4_5HCR_016

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HCR_016 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.074

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5HCR|1|2A|C|320
5HCR|1|2A|G|321
5HCR|1|2A|A|322
5HCR|1|2A|A|323
5HCR|1|2A|G|324
*
5HCR|1|2A|C|339
5HCR|1|2A|G|340
5HCR|1|2A|C|341
5HCR|1|2A|C|342
*
5HCR|1|2A|G|346
5HCR|1|2A|A|347
5HCR|1|2A|G|348
*
5HCR|1|2A|C|360
5HCR|1|2A|G|361
5HCR|1|2A|U|362
5HCR|1|2A|A|363
5HCR|1|2A|G|364

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24