J4_5HL7_005

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5HL7|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HL7_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0549

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5HL7|1|X|G|1347
5HL7|1|X|U|1348
5HL7|1|X|U|1349
5HL7|1|X|U|1350
5HL7|1|X|C|1351
*
5HL7|1|X|G|1375
5HL7|1|X|G|1376
5HL7|1|X|U|1377
5HL7|1|X|U|1378
5HL7|1|X|A|1379
5HL7|1|X|G|1380
*
5HL7|1|X|C|1441
5HL7|1|X|C|1442
*
5HL7|1|X|G|1641
5HL7|1|X|C|1642
5HL7|1|X|C|1643
5HL7|1|X|C|1644
5HL7|1|X|G|1645
5HL7|1|X|U|1646
5HL7|1|X|A|1647
5HL7|1|X|C|1648

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23