J4_5I4L_004
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5I4L|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5I4L_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0529
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5I4L|1|1|G|1492
5I4L|1|1|G|1493
5I4L|1|1|U|1494
5I4L|1|1|U|1495
5I4L|1|1|C|1496
*
5I4L|1|1|G|1520
5I4L|1|1|G|1521
5I4L|1|1|U|1522
5I4L|1|1|U|1523
5I4L|1|1|A|1524
5I4L|1|1|G|1525
*
5I4L|1|1|C|1614
5I4L|1|1|C|1615
*
5I4L|1|1|G|1829
5I4L|1|1|G|1830
5I4L|1|1|U|1831
5I4L|1|1|C|1832
5I4L|1|1|G|1833
5I4L|1|1|U|1834
5I4L|1|1|A|1835
5I4L|1|1|C|1836
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain M9
- 60S ribosomal protein L19-A
- Chain N5
- 60S ribosomal protein L25
- Chain O4
- 60S ribosomal protein L34-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O8
- 60S ribosomal protein L38
- Chain O9
- 60S ribosomal protein L39
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