J4_5I4L_006

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5I4L_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0502

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

5I4L|1|1|G|2130
5I4L|1|1|A|2131
5I4L|1|1|C|2132
5I4L|1|1|U|2133
5I4L|1|1|G|2134
*
5I4L|1|1|C|2146
5I4L|1|1|A|2147
5I4L|1|1|U|2148
5I4L|1|1|A|2149
5I4L|1|1|G|2150
*
5I4L|1|1|U|2186
5I4L|1|1|G|2187
5I4L|1|1|A|2188
5I4L|1|1|U|2189
5I4L|1|1|U|2190
*
5I4L|1|1|A|2317
5I4L|1|1|U|2318
5I4L|1|1|U|2319
5I4L|1|1|A|2320
5I4L|1|1|A|2321
5I4L|1|1|C|2322

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2-A

Chain Q1

60S ribosomal protein L41-A

Chain Q3

60S ribosomal protein L43-A