3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
GAGUAACG*UC*GUAG*CC
Length
16 nucleotides
Bulged bases
5IB7|1|13|C|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5IB7_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.0731
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5IB7|1|13|G|115
5IB7|1|13|A|116
5IB7|1|13|G|117
5IB7|1|13|U|118
5IB7|1|13|A|119
5IB7|1|13|A|120
5IB7|1|13|C|121
5IB7|1|13|G|122
*
5IB7|1|13|U|239
5IB7|1|13|C|240
*
5IB7|1|13|G|286
5IB7|1|13|U|287
5IB7|1|13|A|288
5IB7|1|13|G|289
*
5IB7|1|13|C|311
5IB7|1|13|C|312

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 3I
30S ribosomal protein S12
Chain 7I
30S ribosomal protein S16
Chain 8I
30S ribosomal protein S17

Coloring options:


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