J4_5IB7_015

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GAG*CAUGUGG*CCAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_015 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.505

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5IB7|1|1G|G|142
5IB7|1|1G|A|143
5IB7|1|1G|G|144
*
5IB7|1|1G|C|178
5IB7|1|1G|A|179
5IB7|1|1G|U|180
5IB7|1|1G|G|181
5IB7|1|1G|U|182
5IB7|1|1G|G|183
5IB7|1|1G|G|184
*
5IB7|1|1G|C|193
5IB7|1|1G|C|194
5IB7|1|1G|A|195
5IB7|1|1G|A|196
5IB7|1|1G|A|197
5IB7|1|1G|G|198
*
5IB7|1|1G|C|219
5IB7|1|1G|G|220
5IB7|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20