J4_5IB7_017

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5IB7|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0823

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5IB7|1|1H|C|268
5IB7|1|1H|U|269
*
5IB7|1|1H|G|370
5IB7|1|1H|A|371
5IB7|1|1H|G|372
5IB7|1|1H|U|373
5IB7|1|1H|A|374
5IB7|1|1H|C|375
*
5IB7|1|1H|G|399
5IB7|1|1H|G|400
5IB7|1|1H|A|401
5IB7|1|1H|A|402
5IB7|1|1H|U|403
5IB7|1|1H|C|404
5IB7|1|1H|U|405
5IB7|1|1H|G|406
*
5IB7|1|1H|U|421
5IB7|1|1H|A|422
5IB7|1|1H|A|423
5IB7|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28