J4_5IB7_026

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_026 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0703

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5IB7|1|1H|G|2643
5IB7|1|1H|G|2644
5IB7|1|1H|G|2645
5IB7|1|1H|C|2646
*
5IB7|1|1H|G|2674
5IB7|1|1H|A|2675
5IB7|1|1H|C|2676
*
5IB7|1|1H|G|2731
5IB7|1|1H|G|2732
5IB7|1|1H|A|2733
5IB7|1|1H|A|2734
5IB7|1|1H|G|2735
*
5IB7|1|1H|C|2769
5IB7|1|1H|G|2770
5IB7|1|1H|C|2771

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13

Chain 68

50S ribosomal protein L14