J4_5IB8_006

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5IB8|1|14|G|1271, 5IB8|1|14|A|1272, 5IB8|1|14|U|1273, 5IB8|1|14|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_006 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.06

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|C|1270
5IB8|1|14|G|1271
5IB8|1|14|A|1272
5IB8|1|14|U|1273
5IB8|1|14|A|1274
5IB8|1|14|A|1275
5IB8|1|14|A|1276
*
5IB8|1|14|U|1294
5IB8|1|14|C|1295
*
5IB8|1|14|G|1645
5IB8|1|14|C|1646
5IB8|1|14|G|1647
5IB8|1|14|C|1648
*
5IB8|1|14|G|2009
5IB8|1|14|G|2010

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32