J4_5IBB_017

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5IBB|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IBB_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.073

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5IBB|1|1H|C|268
5IBB|1|1H|U|269
*
5IBB|1|1H|G|370
5IBB|1|1H|A|371
5IBB|1|1H|G|372
5IBB|1|1H|U|373
5IBB|1|1H|A|374
5IBB|1|1H|C|375
*
5IBB|1|1H|G|399
5IBB|1|1H|G|400
5IBB|1|1H|A|401
5IBB|1|1H|A|402
5IBB|1|1H|U|403
5IBB|1|1H|C|404
5IBB|1|1H|U|405
5IBB|1|1H|G|406
*
5IBB|1|1H|U|421
5IBB|1|1H|A|422
5IBB|1|1H|A|423
5IBB|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28