J4_5IBB_020

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5IBB|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IBB_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0609

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5IBB|1|1H|G|1310
5IBB|1|1H|G|1311
5IBB|1|1H|U|1312
5IBB|1|1H|U|1313
5IBB|1|1H|C|1314
*
5IBB|1|1H|G|1338
5IBB|1|1H|G|1339
5IBB|1|1H|U|1340
5IBB|1|1H|U|1341
5IBB|1|1H|A|1342
5IBB|1|1H|G|1343
*
5IBB|1|1H|C|1404
5IBB|1|1H|U|1405
*
5IBB|1|1H|A|1597
5IBB|1|1H|C|1598
5IBB|1|1H|C|1599
5IBB|1|1H|C|1600
5IBB|1|1H|G|1601
5IBB|1|1H|U|1602
5IBB|1|1H|A|1603
5IBB|1|1H|C|1604

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34