J4_5IBB_029

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UUAG*CAC*GGGUCG*CA

Length

15 nucleotides

Bulged bases

5IBB|1|3L|U|8, 5IBB|1|3L|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IBB_029 not in the Motif Atlas

Homologous match to J4_3WFS_001

Geometric discrepancy: 0.4834

The information below is about J4_3WFS_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5IBB|1|3L|U|7
5IBB|1|3L|U|8
5IBB|1|3L|A|9
5IBB|1|3L|G|10
*
5IBB|1|3L|C|25
5IBB|1|3L|A|26
5IBB|1|3L|C|27
*
5IBB|1|3L|G|44
5IBB|1|3L|G|45
5IBB|1|3L|G|46
5IBB|1|3L|U|47
5IBB|1|3L|C|48
5IBB|1|3L|G|49
*
5IBB|1|3L|C|65
5IBB|1|3L|A|66

Current chains

Chain 3L

tRNAVal

Nearby chains