J4_5IMQ_014
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUAG*CAG*CGUGUCC*GUCC
- Length
- 20 nucleotides
- Bulged bases
- 5IMQ|1|5|U|8, 5IMQ|1|5|U|47, 5IMQ|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IMQ_014 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.5668
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5IMQ|1|5|G|5
5IMQ|1|5|G|6
5IMQ|1|5|A|7
5IMQ|1|5|U|8
5IMQ|1|5|A|9
5IMQ|1|5|G|10
*
5IMQ|1|5|C|25
5IMQ|1|5|A|26
5IMQ|1|5|G|27
*
5IMQ|1|5|C|43
5IMQ|1|5|G|44
5IMQ|1|5|U|45
5IMQ|1|5|G|46
5IMQ|1|5|U|47
5IMQ|1|5|C|48
5IMQ|1|5|C|49
*
5IMQ|1|5|G|65
5IMQ|1|5|U|66
5IMQ|1|5|C|67
5IMQ|1|5|C|68
Current chains
- Chain 5
- E site tRNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S7
- Chain x
- 50S ribosomal protein L33
Coloring options: