J4_5IMQ_015

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5IMQ|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IMQ_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1516

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5IMQ|1|A|G|115
5IMQ|1|A|A|116
5IMQ|1|A|G|117
5IMQ|1|A|U|118
5IMQ|1|A|A|119
5IMQ|1|A|A|120
5IMQ|1|A|C|121
5IMQ|1|A|G|122
*
5IMQ|1|A|U|239
5IMQ|1|A|C|240
*
5IMQ|1|A|G|286
5IMQ|1|A|U|287
5IMQ|1|A|A|288
5IMQ|1|A|G|289
*
5IMQ|1|A|C|311
5IMQ|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S16

Chain U

30S ribosomal protein S17