J4_5IMR_003

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAGUAACGC*GUC*GUAGCC*GGCC

Length

22 nucleotides

Bulged bases

5IMR|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|A|G|115
5IMR|1|A|A|116
5IMR|1|A|G|117
5IMR|1|A|U|118
5IMR|1|A|A|119
5IMR|1|A|A|120
5IMR|1|A|C|121
5IMR|1|A|G|122
5IMR|1|A|C|123
*
5IMR|1|A|G|238
5IMR|1|A|U|239
5IMR|1|A|C|240
*
5IMR|1|A|G|286
5IMR|1|A|U|287
5IMR|1|A|A|288
5IMR|1|A|G|289
5IMR|1|A|C|290
5IMR|1|A|C|291
*
5IMR|1|A|G|309
5IMR|1|A|G|310
5IMR|1|A|C|311
5IMR|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S12

Chain T

30S ribosomal protein S16

Chain U

30S ribosomal protein S17