J4_5IMR_006
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- UGGAG*CUACAAUG*CCCAGUUCGGAUUGGGGUC*GACCCCAUGAAGCCGGAA
- Length
- 50 nucleotides
- Bulged bases
- 5IMR|1|A|C|1237, 5IMR|1|A|U|1240, 5IMR|1|A|U|1302, 5IMR|1|A|C|1328, 5IMR|1|A|C|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|A|U|943
5IMR|1|A|G|944
5IMR|1|A|G|945
5IMR|1|A|A|946
5IMR|1|A|G|947
*
5IMR|1|A|C|1234
5IMR|1|A|U|1235
5IMR|1|A|A|1236
5IMR|1|A|C|1237
5IMR|1|A|A|1238
5IMR|1|A|A|1239
5IMR|1|A|U|1240
5IMR|1|A|G|1241
*
5IMR|1|A|C|1296
5IMR|1|A|C|1297
5IMR|1|A|C|1298
5IMR|1|A|A|1299
5IMR|1|A|G|1300
5IMR|1|A|U|1301
5IMR|1|A|U|1302
5IMR|1|A|C|1303
5IMR|1|A|G|1304
5IMR|1|A|G|1305
5IMR|1|A|A|1306
5IMR|1|A|U|1307
5IMR|1|A|U|1308
5IMR|1|A|G|1309
5IMR|1|A|G|1310
5IMR|1|A|G|1311
5IMR|1|A|G|1312
5IMR|1|A|U|1313
5IMR|1|A|C|1314
*
5IMR|1|A|G|1323
5IMR|1|A|A|1324
5IMR|1|A|C|1325
5IMR|1|A|C|1326
5IMR|1|A|C|1327
5IMR|1|A|C|1328
5IMR|1|A|A|1329
5IMR|1|A|U|1330
5IMR|1|A|G|1331
5IMR|1|A|A|1332
5IMR|1|A|A|1333
5IMR|1|A|G|1334
5IMR|1|A|C|1335
5IMR|1|A|C|1336
5IMR|1|A|G|1337
5IMR|1|A|G|1338
5IMR|1|A|A|1339
5IMR|1|A|A|1340
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain 5
- Transfer RNA; tRNA
- Chain K
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S9
- Chain Q
- 30S ribosomal protein S13
- Chain W
- 30S ribosomal protein S19
- Chain Y
- 30S ribosomal protein Thx
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