3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
UGGAG*CUACAAUG*CCCAGUUCGGAUUGGGGUC*GACCCCAUGAAGCCGGAA
Length
50 nucleotides
Bulged bases
5IMR|1|A|C|1237, 5IMR|1|A|U|1240, 5IMR|1|A|U|1302, 5IMR|1|A|C|1328, 5IMR|1|A|C|1336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMR|1|A|U|943
5IMR|1|A|G|944
5IMR|1|A|G|945
5IMR|1|A|A|946
5IMR|1|A|G|947
*
5IMR|1|A|C|1234
5IMR|1|A|U|1235
5IMR|1|A|A|1236
5IMR|1|A|C|1237
5IMR|1|A|A|1238
5IMR|1|A|A|1239
5IMR|1|A|U|1240
5IMR|1|A|G|1241
*
5IMR|1|A|C|1296
5IMR|1|A|C|1297
5IMR|1|A|C|1298
5IMR|1|A|A|1299
5IMR|1|A|G|1300
5IMR|1|A|U|1301
5IMR|1|A|U|1302
5IMR|1|A|C|1303
5IMR|1|A|G|1304
5IMR|1|A|G|1305
5IMR|1|A|A|1306
5IMR|1|A|U|1307
5IMR|1|A|U|1308
5IMR|1|A|G|1309
5IMR|1|A|G|1310
5IMR|1|A|G|1311
5IMR|1|A|G|1312
5IMR|1|A|U|1313
5IMR|1|A|C|1314
*
5IMR|1|A|G|1323
5IMR|1|A|A|1324
5IMR|1|A|C|1325
5IMR|1|A|C|1326
5IMR|1|A|C|1327
5IMR|1|A|C|1328
5IMR|1|A|A|1329
5IMR|1|A|U|1330
5IMR|1|A|G|1331
5IMR|1|A|A|1332
5IMR|1|A|A|1333
5IMR|1|A|G|1334
5IMR|1|A|C|1335
5IMR|1|A|C|1336
5IMR|1|A|G|1337
5IMR|1|A|G|1338
5IMR|1|A|A|1339
5IMR|1|A|A|1340

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain 5
Transfer RNA; tRNA
Chain K
30S ribosomal protein S7
Chain M
30S ribosomal protein S9
Chain Q
30S ribosomal protein S13
Chain W
30S ribosomal protein S19
Chain Y
30S ribosomal protein Thx

Coloring options:

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