J4_5IMR_007

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCGAUGAAG*CGAAUG*CG*CACCGCGCUUUUGCGCGGGGG

Length

38 nucleotides

Bulged bases

5IMR|1|D|U|50, 5IMR|1|D|G|51, 5IMR|1|D|U|120, 5IMR|1|D|C|155, 5IMR|1|D|U|162, 5IMR|1|D|U|163, 5IMR|1|D|U|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|46
5IMR|1|D|C|47
5IMR|1|D|G|48
5IMR|1|D|A|49
5IMR|1|D|U|50
5IMR|1|D|G|51
5IMR|1|D|A|52
5IMR|1|D|A|53
5IMR|1|D|G|54
*
5IMR|1|D|C|116
5IMR|1|D|G|117
5IMR|1|D|A|118
5IMR|1|D|A|119
5IMR|1|D|U|120
5IMR|1|D|G|121
*
5IMR|1|D|C|130
5IMR|1|D|G|131
*
5IMR|1|D|C|148
5IMR|1|D|A|149
5IMR|1|D|C|150
5IMR|1|D|C|151
5IMR|1|D|G|152
5IMR|1|D|C|153
5IMR|1|D|G|154
5IMR|1|D|C|155
5IMR|1|D|U|161
5IMR|1|D|U|162
5IMR|1|D|U|163
5IMR|1|D|U|164
5IMR|1|D|G|171
5IMR|1|D|C|172
5IMR|1|D|G|173
5IMR|1|D|C|174
5IMR|1|D|G|175
5IMR|1|D|G|176
5IMR|1|D|G|177
5IMR|1|D|G|178
5IMR|1|D|G|179

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain y

50S ribosomal protein L34