J4_5IMR_008

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

5IMR|1|D|G|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|297
5IMR|1|D|G|298
5IMR|1|D|A|299
5IMR|1|D|A|300
5IMR|1|D|G|301
*
5IMR|1|D|C|316
5IMR|1|D|G|317
5IMR|1|D|C|318
5IMR|1|D|C|319
*
5IMR|1|D|G|323
5IMR|1|D|A|324
5IMR|1|D|G|325
*
5IMR|1|D|C|337
5IMR|1|D|G|338
5IMR|1|D|U|339
5IMR|1|D|A|340
5IMR|1|D|G|341

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain q

50S ribosomal protein L24