3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GACC*GGCCAGAAG*CGUGGUGG*CC
Length
23 nucleotides
Bulged bases
5IMR|1|D|A|1444|||A, 5IMR|1|D|A|1471, 5IMR|1|D|G|1521
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMR|1|D|G|1444
5IMR|1|D|A|1444|||A
5IMR|1|D|C|1445
5IMR|1|D|C|1446
*
5IMR|1|D|G|1465
5IMR|1|D|G|1466
5IMR|1|D|C|1467
5IMR|1|D|C|1468
5IMR|1|D|A|1469
5IMR|1|D|G|1470
5IMR|1|D|A|1471
5IMR|1|D|A|1472
5IMR|1|D|G|1473
*
5IMR|1|D|C|1518
5IMR|1|D|G|1519
5IMR|1|D|U|1520
5IMR|1|D|G|1521
5IMR|1|D|G|1522
5IMR|1|D|U|1523
5IMR|1|D|G|1524
5IMR|1|D|G|1525
*
5IMR|1|D|C|1546
5IMR|1|D|C|1547

Current chains

Chain D
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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