J4_5IMR_012

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUGCC*GGCGGCC*GUCCUAAGGUAGC*GCACGAAAA

Length

34 nucleotides

Bulged bases

5IMR|1|D|U|1834, 5IMR|1|D|A|1970, 5IMR|1|D|A|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|U|1833
5IMR|1|D|U|1834
5IMR|1|D|G|1835
5IMR|1|D|C|1836
5IMR|1|D|C|1837
*
5IMR|1|D|G|1903
5IMR|1|D|G|1904
5IMR|1|D|C|1905
5IMR|1|D|G|1906
5IMR|1|D|G|1907
5IMR|1|D|C|1908
5IMR|1|D|C|1909
*
5IMR|1|D|G|1922
5IMR|1|D|U|1923
5IMR|1|D|C|1924
5IMR|1|D|C|1925
5IMR|1|D|U|1926
5IMR|1|D|A|1927
5IMR|1|D|A|1928
5IMR|1|D|G|1929
5IMR|1|D|G|1930
5IMR|1|D|U|1931
5IMR|1|D|A|1932
5IMR|1|D|G|1933
5IMR|1|D|C|1934
*
5IMR|1|D|G|1964
5IMR|1|D|C|1965
5IMR|1|D|A|1966
5IMR|1|D|C|1967
5IMR|1|D|G|1968
5IMR|1|D|A|1969
5IMR|1|D|A|1970
5IMR|1|D|A|1971
5IMR|1|D|A|1972

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Elongation factor 4

Chain a

50S ribosomal protein L2