J4_5IMR_013

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAAG*CUGACUG*CAGGG*CGG

Length

20 nucleotides

Bulged bases

5IMR|1|D|A|2286, 5IMR|1|D|A|2288, 5IMR|1|D|A|2346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|2285
5IMR|1|D|A|2286
5IMR|1|D|A|2287
5IMR|1|D|A|2288
5IMR|1|D|G|2289
*
5IMR|1|D|C|2343
5IMR|1|D|U|2344
5IMR|1|D|G|2345
5IMR|1|D|A|2346
5IMR|1|D|C|2347
5IMR|1|D|U|2348
5IMR|1|D|G|2349
*
5IMR|1|D|C|2368
5IMR|1|D|A|2369
5IMR|1|D|G|2370
5IMR|1|D|G|2371
5IMR|1|D|G|2372
*
5IMR|1|D|C|2381
5IMR|1|D|G|2382
5IMR|1|D|G|2383

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L18

Chain s

50S ribosomal protein L27

Chain x

50S ribosomal protein L33

Chain z

50S ribosomal protein L35