J4_5IMR_016
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GGAUAG*CAG*CGUGUCCUU*GAGUCC
- Length
- 24 nucleotides
- Bulged bases
- 5IMR|1|5|U|8, 5IMR|1|5|U|47, 5IMR|1|5|C|48, 5IMR|1|5|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|5|G|5
5IMR|1|5|G|6
5IMR|1|5|A|7
5IMR|1|5|U|8
5IMR|1|5|A|9
5IMR|1|5|G|10
*
5IMR|1|5|C|25
5IMR|1|5|A|26
5IMR|1|5|G|27
*
5IMR|1|5|C|43
5IMR|1|5|G|44
5IMR|1|5|U|45
5IMR|1|5|G|46
5IMR|1|5|U|47
5IMR|1|5|C|48
5IMR|1|5|C|49
5IMR|1|5|U|50
5IMR|1|5|U|51
*
5IMR|1|5|G|63
5IMR|1|5|A|64
5IMR|1|5|G|65
5IMR|1|5|U|66
5IMR|1|5|C|67
5IMR|1|5|C|68
Current chains
- Chain 5
- E site- tRNA
Nearby chains
- Chain Z
- 50S ribosomal protein L1
- Chain x
- 50S ribosomal protein L33
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