J4_5IMR_019

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAGGGUUCC*GGGUUAGGC*GUACCGCAAAC*GUG

Length

33 nucleotides

Bulged bases

5IMR|1|D|U|1312, 5IMR|1|D|U|1340, 5IMR|1|D|U|1341, 5IMR|1|D|U|1602, 5IMR|1|D|C|1607, 5IMR|1|D|A|1609, 5IMR|1|D|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|1306
5IMR|1|D|A|1307
5IMR|1|D|A|1308
5IMR|1|D|G|1309
5IMR|1|D|G|1310
5IMR|1|D|G|1311
5IMR|1|D|U|1312
5IMR|1|D|U|1313
5IMR|1|D|C|1314
5IMR|1|D|C|1315
*
5IMR|1|D|G|1337
5IMR|1|D|G|1338
5IMR|1|D|G|1339
5IMR|1|D|U|1340
5IMR|1|D|U|1341
5IMR|1|D|A|1342
5IMR|1|D|G|1343
5IMR|1|D|G|1344
5IMR|1|D|C|1345
*
5IMR|1|D|G|1601
5IMR|1|D|U|1602
5IMR|1|D|A|1603
5IMR|1|D|C|1604
5IMR|1|D|C|1605
5IMR|1|D|G|1606
5IMR|1|D|C|1607
5IMR|1|D|A|1608
5IMR|1|D|A|1609
5IMR|1|D|A|1610
5IMR|1|D|C|1611
*
5IMR|1|D|G|1620
5IMR|1|D|U|1621
5IMR|1|D|G|1622

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain y

50S ribosomal protein L34