J4_5IQR_001

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5IQR|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IQR_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1192

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5IQR|1|1|C|268
5IQR|1|1|C|269
*
5IQR|1|1|G|370
5IQR|1|1|A|371
5IQR|1|1|G|372
5IQR|1|1|U|373
5IQR|1|1|A|374
5IQR|1|1|G|375
*
5IQR|1|1|U|399
5IQR|1|1|G|400
5IQR|1|1|A|401
5IQR|1|1|A|402
5IQR|1|1|U|403
5IQR|1|1|A|404
5IQR|1|1|U|405
5IQR|1|1|G|406
*
5IQR|1|1|C|421
5IQR|1|1|A|422
5IQR|1|1|A|423
5IQR|1|1|G|424

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28