J4_5IQR_016

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

A(4SU)AG*CA*U(7MG)(3AU)CC*GU

Length

13 nucleotides

Bulged bases

5IQR|1|6|4SU|8, 5IQR|1|6|3AU|47, 5IQR|1|6|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IQR_016 not in the Motif Atlas

Homologous match to J4_5WT1_001

Geometric discrepancy: 0.3763

The information below is about J4_5WT1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35610.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

4

Unit IDs

5IQR|1|6|A|7
5IQR|1|6|4SU|8
5IQR|1|6|A|9
5IQR|1|6|G|10
*
5IQR|1|6|C|25
5IQR|1|6|A|26
*
5IQR|1|6|U|45
5IQR|1|6|7MG|46
5IQR|1|6|3AU|47
5IQR|1|6|C|48
5IQR|1|6|C|49
*
5IQR|1|6|G|65
5IQR|1|6|U|66

Current chains

Chain 6

A/T tRNA(Phe)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

GTP pyrophosphokinase

Chain q

30S ribosomal protein S12