J4_5IQR_017
3D structure
- PDB id
- 5IQR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to the 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5IQR|1|6|4SU|8, 5IQR|1|6|3AU|47, 5IQR|1|6|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IQR_017 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.3357
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.1
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5IQR|1|6|A|7
5IQR|1|6|4SU|8
5IQR|1|6|A|9
5IQR|1|6|G|10
*
5IQR|1|6|C|25
5IQR|1|6|A|26
5IQR|1|6|G|27
*
5IQR|1|6|C|43
5IQR|1|6|G|44
5IQR|1|6|U|45
5IQR|1|6|7MG|46
5IQR|1|6|3AU|47
5IQR|1|6|C|48
5IQR|1|6|C|49
*
5IQR|1|6|G|65
5IQR|1|6|U|66
Current chains
- Chain 6
- A/T tRNA(Phe)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- GTP pyrophosphokinase
- Chain q
- 30S ribosomal protein S12
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