J4_5IT8_006
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5IT8|1|BA|C|576, 5IT8|1|BA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IT8_006 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0415
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IT8|1|BA|G|575
5IT8|1|BA|C|576
5IT8|1|BA|G|577
*
5IT8|1|BA|C|764
5IT8|1|BA|G|765
5IT8|1|BA|A|766
5IT8|1|BA|A|767
5IT8|1|BA|A|768
5IT8|1|BA|G|769
*
5IT8|1|BA|C|810
5IT8|1|BA|C|811
5IT8|1|BA|G|812
5IT8|1|BA|U|813
5IT8|1|BA|A|814
5IT8|1|BA|A|815
5IT8|1|BA|A|816
5IT8|1|BA|C|817
5IT8|1|BA|G|818
5IT8|1|BA|A|819
5IT8|1|BA|U|820
5IT8|1|BA|G|821
*
5IT8|1|BA|C|879
5IT8|1|BA|C|880
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BH
- 30S ribosomal protein S8
- Chain BL
- 30S ribosomal protein S12
- Chain BO
- 30S ribosomal protein S15
- Chain BQ
- 30S ribosomal protein S17
- Chain BU
- 30S ribosomal protein S21
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
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