J4_5IT8_009

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5IT8|1|CA|U|653, 5IT8|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0465

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5IT8|1|CA|C|601
5IT8|1|CA|A|602
5IT8|1|CA|A|603
5IT8|1|CA|G|604
*
5IT8|1|CA|C|624
5IT8|1|CA|G|625
5IT8|1|CA|A|626
5IT8|1|CA|A|627
5IT8|1|CA|G|628
*
5IT8|1|CA|C|635
5IT8|1|CA|G|636
5IT8|1|CA|A|637
5IT8|1|CA|G|638
*
5IT8|1|CA|C|650
5IT8|1|CA|G|651
5IT8|1|CA|U|652
5IT8|1|CA|U|653
5IT8|1|CA|A|654
5IT8|1|CA|A|655
5IT8|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15