J4_5IT8_015

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5IT8|1|CA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_015 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0815

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5IT8|1|CA|C|1833
5IT8|1|CA|U|1834
5IT8|1|CA|2MG|1835
*
5IT8|1|CA|C|1905
5IT8|1|CA|G|1906
*
5IT8|1|CA|C|1924
5IT8|1|CA|C|1925
5IT8|1|CA|U|1926
5IT8|1|CA|A|1927
5IT8|1|CA|A|1928
5IT8|1|CA|G|1929
5IT8|1|CA|G|1930
5IT8|1|CA|U|1931
5IT8|1|CA|A|1932
5IT8|1|CA|G|1933
*
5IT8|1|CA|C|1967
5IT8|1|CA|G|1968
5IT8|1|CA|A|1969
5IT8|1|CA|A|1970
5IT8|1|CA|U|1971
5IT8|1|CA|G|1972

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2