J4_5IT9_003
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5IT9|1|2|A|622, 5IT9|1|2|A|1025, 5IT9|1|2|U|1028, 5IT9|1|2|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IT9_003 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1133
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|A|621
5IT9|1|2|A|622
5IT9|1|2|G|623
*
5IT9|1|2|C|974
5IT9|1|2|G|975
5IT9|1|2|A|976
5IT9|1|2|A|977
5IT9|1|2|A|978
5IT9|1|2|G|979
*
5IT9|1|2|C|1020
5IT9|1|2|C|1021
5IT9|1|2|A|1022
5IT9|1|2|U|1023
5IT9|1|2|A|1024
5IT9|1|2|A|1025
5IT9|1|2|A|1026
5IT9|1|2|C|1027
5IT9|1|2|U|1028
5IT9|1|2|A|1029
5IT9|1|2|U|1030
5IT9|1|2|G|1031
*
5IT9|1|2|U|1102
5IT9|1|2|U|1103
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain O
- Ribosomal protein uS14
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS21
- Chain a
- Ribosomal protein eS26
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