J4_5IWA_003

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

5IWA|1|A|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IWA_003 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0584

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

5IWA|1|A|G|575
5IWA|1|A|G|576
5IWA|1|A|G|577
*
5IWA|1|A|C|764
5IWA|1|A|G|765
5IWA|1|A|A|766
5IWA|1|A|A|767
5IWA|1|A|A|768
5IWA|1|A|G|769
*
5IWA|1|A|C|810
5IWA|1|A|C|811
5IWA|1|A|C|812
5IWA|1|A|U|813
5IWA|1|A|A|814
5IWA|1|A|A|815
5IWA|1|A|A|816
5IWA|1|A|C|817
5IWA|1|A|G|818
5IWA|1|A|A|819
5IWA|1|A|U|820
5IWA|1|A|G|821
*
5IWA|1|A|C|879
5IWA|1|A|C|880

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17