J4_5J30_008

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5J30|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J30_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0516

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5J30|1|RA|G|1310
5J30|1|RA|G|1311
5J30|1|RA|U|1312
5J30|1|RA|U|1313
5J30|1|RA|C|1314
*
5J30|1|RA|G|1338
5J30|1|RA|G|1339
5J30|1|RA|U|1340
5J30|1|RA|U|1341
5J30|1|RA|A|1342
5J30|1|RA|G|1343
*
5J30|1|RA|C|1404
5J30|1|RA|U|1405
*
5J30|1|RA|A|1597
5J30|1|RA|C|1598
5J30|1|RA|C|1599
5J30|1|RA|C|1600
5J30|1|RA|G|1601
5J30|1|RA|U|1602
5J30|1|RA|A|1603
5J30|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23