J4_5J3C_008

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5J3C|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J3C_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0591

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J3C|1|RA|G|1310
5J3C|1|RA|G|1311
5J3C|1|RA|U|1312
5J3C|1|RA|U|1313
5J3C|1|RA|C|1314
*
5J3C|1|RA|G|1338
5J3C|1|RA|G|1339
5J3C|1|RA|U|1340
5J3C|1|RA|U|1341
5J3C|1|RA|A|1342
5J3C|1|RA|G|1343
*
5J3C|1|RA|C|1404
5J3C|1|RA|U|1405
*
5J3C|1|RA|A|1597
5J3C|1|RA|C|1598
5J3C|1|RA|C|1599
5J3C|1|RA|C|1600
5J3C|1|RA|G|1601
5J3C|1|RA|U|1602
5J3C|1|RA|A|1603
5J3C|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23