J4_5J3C_018
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5J3C|1|XV|U|8, 5J3C|1|XV|U|47, 5J3C|1|XV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J3C_018 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1622
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5J3C|1|XV|G|7
5J3C|1|XV|U|8
5J3C|1|XV|G|9
5J3C|1|XV|G|10
*
5J3C|1|XV|C|25
5J3C|1|XV|G|26
5J3C|1|XV|U|27
*
5J3C|1|XV|A|43
5J3C|1|XV|A|44
5J3C|1|XV|G|45
5J3C|1|XV|G|46
5J3C|1|XV|U|47
5J3C|1|XV|C|48
5J3C|1|XV|G|49
*
5J3C|1|XV|C|65
5J3C|1|XV|C|66
Current chains
- Chain XV
- P-site tRNA fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain XY
- Peptide chain release factor 1
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
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