3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
CU*GAGUAC*GGAAUCUG*UAAG
Length
20 nucleotides
Bulged bases
5J3C|1|YA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5J3C_019 not in the Motif Atlas
Homologous match to J4_9DFE_001
Geometric discrepancy: 0.0495
The information below is about J4_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

5J3C|1|YA|C|268
5J3C|1|YA|U|269
*
5J3C|1|YA|G|370
5J3C|1|YA|A|371
5J3C|1|YA|G|372
5J3C|1|YA|U|373
5J3C|1|YA|A|374
5J3C|1|YA|C|375
*
5J3C|1|YA|G|399
5J3C|1|YA|G|400
5J3C|1|YA|A|401
5J3C|1|YA|A|402
5J3C|1|YA|U|403
5J3C|1|YA|C|404
5J3C|1|YA|U|405
5J3C|1|YA|G|406
*
5J3C|1|YA|U|421
5J3C|1|YA|A|422
5J3C|1|YA|A|423
5J3C|1|YA|G|424

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y1
50S ribosomal protein L28
Chain YI
50S ribosomal protein L9

Coloring options:


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