J4_5J4B_005
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5J4B|1|1A|U|1387
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J4B_005 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0721
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J4B|1|1A|U|1359
5J4B|1|1A|C|1360
*
5J4B|1|1A|G|1384
5J4B|1|1A|G|1385
5J4B|1|1A|U|1386
5J4B|1|1A|U|1387
5J4B|1|1A|A|1388
5J4B|1|1A|G|1389
*
5J4B|1|1A|C|1450
5J4B|1|1A|U|1451
*
5J4B|1|1A|A|1643
5J4B|1|1A|C|1644
5J4B|1|1A|C|1645
5J4B|1|1A|C|1646
5J4B|1|1A|G|1647
5J4B|1|1A|U|1648
5J4B|1|1A|A|1649
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
Coloring options: