J4_5J4B_017

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5J4B|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4B_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0786

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5J4B|1|2A|C|268
5J4B|1|2A|U|269
*
5J4B|1|2A|G|370
5J4B|1|2A|A|371
5J4B|1|2A|G|372
5J4B|1|2A|U|373
5J4B|1|2A|A|374
5J4B|1|2A|C|375
*
5J4B|1|2A|G|399
5J4B|1|2A|G|400
5J4B|1|2A|A|401
5J4B|1|2A|A|402
5J4B|1|2A|U|403
5J4B|1|2A|C|404
5J4B|1|2A|U|405
5J4B|1|2A|G|406
*
5J4B|1|2A|U|421
5J4B|1|2A|A|422
5J4B|1|2A|A|423
5J4B|1|2A|G|424

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9